PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016511186.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 138aa    MW: 15372.1 Da    PI: 4.482
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016511186.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.4e-05225123
                    EEETTTT.EEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCg.ksFsrksnLkrHirtH 23
                    y+C+ C+ ksFs   +Lk+H++ +
  XP_016511186.1  2 YSCTRCNkKSFSVLADLKSHLKHC 25
                    99*******************977 PP

2zf-C2H213.60.000193349521
                    TTTEEESSHHHHHHHHH CS
         zf-C2H2  5 dCgksFsrksnLkrHir 21
                     Cg+sFsrk+ L  H+ 
  XP_016511186.1 33 SCGTSFSRKDKLFGHMA 49
                    5**************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.7E-42349IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MYSCTRCNKK SFSVLADLKS HLKHCGETKW KCSCGTSFSR KDKLFGHMAL FEGHMPAIEP  60
EEEAKPPAAA VEDDVEMDVS RGSDNGFLDI RTGSDNGFLD RLMLDGFESI DSYCFQDLLE  120
SSSPNGLNTV PDTNEWFS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ2612448e-48GQ261244.1 Solanum lycopersicum cultivar Rio Grande PtoR Hop-interacting protein THI038 mRNA, complete cds.
GenBankHG9755168e-48HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009626824.13e-97PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
RefseqXP_016511186.11e-100PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
SwissprotQ9C8N52e-28STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLG8Z2662e-76G8Z266_SOLLC; Hop-interacting protein THI038
STRINGSolyc04g056320.1.16e-76(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA100002126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.31e-24C2H2 family protein